PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 411aa    MW: 46050.4 Da    PI: 6.795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.96.5e-106453991374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLlecA a+s ++l +a+++L +ls+lasp++ +  +R++ayf++A+++r+ +s+ ++++ +   +t       + + ++lf+++sP++kf+
  XP_015891260.1  45 LITLLLECAVAISVDNLGEARRMLLELSQLASPYAeSCGERVVAYFAKAMSSRVINSWLGISSPFLNHRT-------VHSTFQLFNNISPFIKFA 132
                     5789*******************************55679**********************87654444.......356789************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g     s e l etg++L++fA++lg++fef++ +a+++ d+
  XP_015891260.1 133 HFTSNQAILEAFHRRDRVHIVDLDIMQGLQWPALFHILATRIEGPPHVRLTGLGT----SMEILMETGKQLSNFAKRLGISFEFQP-IASKFGDI 222
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +++++++++gE+laV++    h+l+d +++  +    +++l+ +l P++v+vveq+++  ++sFl+rf+ al+yys++fdsl a l++e+  r+ 
  XP_015891260.1 223 DVSAFQLRRGETLAVHWLQ--HSLYDATGPDWK----TIRLLEELAPRIVTVVEQDVSK-GGSFLDRFVGALHYYSTVFDSLGAYLGSEDPSRHR 310
                     ******************9..999999999888....********************98.789******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+ l+ +ei n++a  g +r  +  ++++Wr+ +++  F +vp+s + ++qa+l+l++++  +gy++ + +g l lgWk+ +L+++SaW+
  XP_015891260.1 311 VEHCLVYKEINNILAIGGPARSGED-KFRHWRSEIGKR-FLQVPMSANSMAQAQLILNMFPpAHGYSLVQGDGVLRLGWKETSLYTASAWT 399
                     ********************77665.5********986.9**************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.61919378IPR005202Transcription factor GRAS
PfamPF035142.3E-10345399IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLRSYLETDG DDESVQWNNN NEIFQNGRDG TGLGLSKVDE HGLSLITLLL ECAVAISVDN  60
LGEARRMLLE LSQLASPYAE SCGERVVAYF AKAMSSRVIN SWLGISSPFL NHRTVHSTFQ  120
LFNNISPFIK FAHFTSNQAI LEAFHRRDRV HIVDLDIMQG LQWPALFHIL ATRIEGPPHV  180
RLTGLGTSME ILMETGKQLS NFAKRLGISF EFQPIASKFG DIDVSAFQLR RGETLAVHWL  240
QHSLYDATGP DWKTIRLLEE LAPRIVTVVE QDVSKGGSFL DRFVGALHYY STVFDSLGAY  300
LGSEDPSRHR VEHCLVYKEI NNILAIGGPA RSGEDKFRHW RSEIGKRFLQ VPMSANSMAQ  360
AQLILNMFPP AHGYSLVQGD GVLRLGWKET SLYTASAWTS CTSNIVPRYS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-48493988374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891260.10.0PREDICTED: protein SCARECROW-like
SwissprotQ9M3841e-145SCR_ARATH; Protein SCARECROW
TrEMBLA0A067JRC90.0A0A067JRC9_JATCU; GRAS29 protein
STRINGPOPTR_0002s03740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-146GRAS family protein